California State University, Chico

Jun 19-20, 2019

8:30 am - 4:30 pm

Instructors: Robin Donatello (CSU Chico), Mahesh Maskey (UC Davis)

Helpers: Kathleen Johnson (CHC), Esther Kukielka (UC Davis), Collin Dever (CSUC)

General Information

Data Carpentry develops and teaches workshops on the fundamental data skills needed to conduct research. Its target audience is researchers who have little to no prior computational experience, and its lessons are domain specific, building on learners' existing knowledge to enable them to quickly apply skills learned to their own research. Participants will be encouraged to help one another and to apply what they have learned to their own data problems. Applications and examples using data from the Center for Healthy Communities will be presented.

For more information on what we teach and why, please see our paper "Good Enough Practices for Scientific Computing".

Our HackMD Collaborative Notes: http://bit.ly/chc_dc_notes

Who: This workshop is aimed at researchers and analysts at the Center for Healthy Communities (CHC), but is also open to other campus researchers, graduate students and the public. You don't need to have any previous knowledge of the tools that will be presented at the workshop.

Where: Holt Hall 155, 400 W 1st St, Chico, CA 95929. Get directions with OpenStreetMap or Google Maps. We are in Holt Hall Room 155. Holt Hall is made up of thre "blocks" of rooms, with some doors facing the inside of the block and others facing outside. This will be a room facing the outside of the building, in the middle block of the building. Signs will be posted. A map containing parking locations can be found here.

When: Jun 19-20, 2019. Add to your Google Calendar.

Requirements: Participants must bring a laptop with a Mac, Linux, or Windows operating system (not a tablet, Chromebook, etc.) that they have administrative privileges on. They should have a few specific software packages installed (listed below). There will be loaner laptops available in the room available on an as-needed basis. Participants are also required to abide by Data Carpentry's Code of Conduct.

Accessibility: We are committed to making this workshop accessible to everybody. The workshop organizers have checked that:

Materials will be provided in advance of the workshop and large-print handouts are available if needed by notifying the organizers in advance. If we can help making learning easier for you (e.g. sign-language interpreters, lactation facilities) please get in touch (using contact details below) and we will attempt to provide them.

Contact: Please email datascience@csuchico.edu for more information.


Surveys

Please be sure to complete these surveys before and after the workshop.

Pre-workshop Survey

Post-workshop Survey


Schedule

Day 1

Before Pre-workshop survey
08:00 Registration & software setup assistance
08:30 Data Organization In Spreadsheets
10:00 Morning break
10:15 OpenRefine for Data Cleaning
12:00 Lunch break
13:00 Intro to R and Markdown for Social Scientists
14:30 Afternoon break
14:45 Importing and exploring data
16:00 Wrap-up
16:30 END

Day 2

09:00 Data management
10:30 Morning break
12:00 Lunch break
13:00 Data Visualization
14:30 Afternoon break
14:45 Showcase, brainstorm, open work
16:00 Wrap-up
16:30 Post-workshop Survey
16:40 END

Syllabus




Setup

To participate in a Data Carpentry workshop, you will need access to the software described below. In addition, you will need an up-to-date web browser.

We maintain a list of common issues that occur during installation as a reference for instructors that may be useful on the Configuration Problems and Solutions wiki page.

A spreadsheet program


For this workshop you will need a spreadsheet program. Many people already have Microsoft Excel installed, and if you do, you're set!

If you need a spreadsheet program, there are a few other options, like OpenOffice and LibreOffice. Install instructions for LibreOffice, which is free and open source, are here.

OpenRefine

For this lesson you will need OpenRefine and a web browser. Note: this is a Java program that runs on your machine (not in the cloud). It runs inside a web browser, but no web connection is needed.

Check that you have either the Firefox or the Chrome browser installed and set as your default browser. OpenRefine runs in your default browser. It will not run correctly in Internet Explorer.

Download software from http://openrefine.org/

Create a new directory called OpenRefine.

Unzip the downloaded file into the OpenRefine directory by right-clicking and selecting "Extract ...".

Go to your newly created OpenRefine directory.

Launch OpenRefine by clicking google-refine.exe (this will launch a command prompt window, but you can ignore that - just wait for OpenRefine to open in the browser).

If you are using a different browser, or if OpenRefine does not automatically open for you, point your browser at http://127.0.0.1:3333/ or http://localhost:3333 to use the program.

Check that you have either the Firefox or the Chrome browser installed and set as your default browser. OpenRefine runs in your default browser. It may not run correctly in Safari.

Download software from http://openrefine.org/.

Create a new directory called OpenRefine.

Unzip the downloaded file into the OpenRefine directory by double-clicking it.

Go to your newly created OpenRefine directory.

Launch OpenRefine by dragging the icon into the Applications folder.

Use Ctrl-click/Open ... to launch it.

If you are using a different browser, or if OpenRefine does not automatically open for you, point your browser at http://127.0.0.1:3333/ or http://localhost:3333 to use the program.

Check that you have either the Firefox or the Chrome browser installed and set as your default browser. OpenRefine runs in your default browser.

Download software from http://openrefine.org/.

Make a directory called OpenRefine.

Unzip the downloaded file into the OpenRefine directory.

Go to your newly created OpenRefine directory.

Launch OpenRefine by entering ./refine into the terminal within the OpenRefine directory.

If you are using a different browser, or if OpenRefine does not automatically open for you, point your browser at http://127.0.0.1:3333/ or http://localhost:3333 to use the program.

R

R is a programming language that is especially powerful for data exploration, visualization, and statistical analysis. To interact with R, we use RStudio. For this workshop we are providing the option to run these programs in the cloud. If you choose to install this software on your computer follow the instructions below for your operating system. If you choose to use R Studio in the cloud then make an account on <a href="https://rstudio.cloud/>R Studio Cloud</a> prior to the workshop.

Video Tutorial

Install R by downloading and running this .exe file from CRAN. Also, please install the RStudio IDE. Note that if you have separate user and admin accounts, you should run the installers as administrator (right-click on .exe file and select "Run as administrator" instead of double-clicking). Otherwise problems may occur later, for example when installing R packages.

You can download the binary files for your distribution from CRAN. Or you can use your package manager (e.g. for Debian/Ubuntu run sudo apt-get install r-base and for Fedora run sudo dnf install R). Also, please install the RStudio IDE.